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    rwdd2b RWD domain containing 2B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780030, updated on 5-Mar-2024

    Summary

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    Official Symbol
    rwdd2bprovided by Xenbase
    Official Full Name
    RWD domain containing 2Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-963133
    See related
    Ensembl:ENSXETG00000020254
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See rwdd2b in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (16692671..16700943)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (12552290..12559840)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene MAP3K7 C-terminal like Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene ubiquitin specific peptidase 16 Neighboring gene transmembrane protein 97 Neighboring gene listerin E3 ubiquitin protein ligase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC145457

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in acrosome reaction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spindle organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in acrosomal vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RWD domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079107.1 → NP_001072575.1  RWD domain-containing protein 2B

      See identical proteins and their annotated locations for NP_001072575.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122926
      UniProtKB/TrEMBL
      F6U7D3, F6Z1M0, Q0IHX2
      Related
      ENSXETP00000113962.1, ENSXETT00000122389.1
      Conserved Domains (2) summary
      pfam05773
      Location:7 → 132
      RWD; RWD domain
      pfam06544
      Location:162 → 287
      DUF1115; Protein of unknown function (DUF1115)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      16692671..16700943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031896124.1 → XP_031751984.1  RWD domain-containing protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A803KH50
      Related
      ENSXETP00000043691.5, ENSXETT00000043691.5
      Conserved Domains (2) summary
      pfam05773
      Location:22 → 147
      RWD; RWD domain
      pfam06544
      Location:177 → 302
      DUF1115; Protein of unknown function (DUF1115)

    2. XM_031896125.1 → XP_031751985.1  RWD domain-containing protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A8J1J4Q7
      Conserved Domains (2) summary
      pfam05773
      Location:22 → 146
      RWD; RWD domain
      pfam06544
      Location:176 → 301
      DUF1115; Protein of unknown function (DUF1115)

    3. XM_012957284.3 → XP_012812738.1  RWD domain-containing protein 2B isoform X4

      UniProtKB/TrEMBL
      A0A803K6J1
      Related
      ENSXETP00000115985.1, ENSXETT00000120494.1
      Conserved Domains (2) summary
      pfam05773
      Location:7 → 131
      RWD; RWD domain
      pfam06544
      Location:161 → 286
      DUF1115; Protein of unknown function (DUF1115)

    4. XM_012957282.3 → XP_012812736.1  RWD domain-containing protein 2B isoform X3

      See identical proteins and their annotated locations for XP_012812736.1

      UniProtKB/TrEMBL
      F6U7D3, F6Z1M0, Q0IHX2
      Conserved Domains (2) summary
      pfam05773
      Location:7 → 132
      RWD; RWD domain
      pfam06544
      Location:162 → 287
      DUF1115; Protein of unknown function (DUF1115)

    5. XM_012957283.3 → XP_012812737.1  RWD domain-containing protein 2B isoform X3

      See identical proteins and their annotated locations for XP_012812737.1

      UniProtKB/TrEMBL
      F6U7D3, F6Z1M0, Q0IHX2
      Conserved Domains (2) summary
      pfam05773
      Location:7 → 132
      RWD; RWD domain
      pfam06544
      Location:162 → 287
      DUF1115; Protein of unknown function (DUF1115)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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