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    TTHERM_00333210 60S ribosomal protein L4 [ Tetrahymena thermophila SB210 ]

    Gene ID: 7828093, updated on 28-Dec-2023

    Summary

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    Gene symbol
    TTHERM_00333210
    Gene description
    60S ribosomal protein L4
    Locus tag
    TTHERM_00333210
    Gene type
    protein coding
    RNA name
    60S ribosomal protein L4
    RefSeq status
    PROVISIONAL
    Organism
    Tetrahymena thermophila SB210 (strain: SB210)
    Lineage
    Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymenidae; Tetrahymena
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    Genomic context

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    Exon count:
    3

    NW_002476380.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II Neighboring gene SPFH domain/band 7 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002476380.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Klinge S, et al. Science, 2011 Nov 18. PMID 22052974
    2. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Eisen JA, et al. PLoS Biol, 2006 Sep. PMID 16933976, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    60S ribosomal protein L4
    XP_001017488.2
    • encoded by transcript TTHERM_00333210A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002476380.1 Reference assembly

      Range
      1254..3549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001017488.3 → XP_001017488.2  60S ribosomal protein L4 [Tetrahymena thermophila SB210]

      See identical proteins and their annotated locations for XP_001017488.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0DJ55
      Conserved Domains (1) summary
      PTZ00428
      Location:1 → 390
      PTZ00428; 60S ribosomal protein L4; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DJ55.1

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