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    LOC8058496 potassium channel AKT2 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8058496, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8058496
    Gene description
    potassium channel AKT2
    Locus tag
    SORBI_3009G147500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8058496 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (50442008..50451604, complement)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8058495 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene pentatricopeptide repeat-containing protein At2g01390 Neighboring gene uncharacterized LOC8077149 Neighboring gene patellin-3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium channel AKT2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      50442008..50451604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002441100.2 → XP_002441145.1  potassium channel AKT2

      See identical proteins and their annotated locations for XP_002441145.1

      UniProtKB/TrEMBL
      A0A1Z5R3W4, A0A921QCJ0, C5YYC0
      Conserved Domains (2) summary
      PLN03192
      Location:30 → 824
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:562 → 592
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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