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    PF3D7_0502000 vacuolar protein sorting-associated protein 11, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 812859, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0502000
    Gene description
    vacuolar protein sorting-associated protein 11, putative
    Locus tag
    PF3D7_0502000
    See related
    PlasmoDB:PF3D7_0502000; VEuPathDB:PF3D7_0502000
    Gene type
    protein coding
    RNA name
    vacuolar protein sorting-associated protein 11, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0502000 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_004326.2 (97657..101895)

    Chromosome 5 - NC_004326.2Genomic Context describing neighboring genes Neighboring gene chromatin assembly factor 1 subunit A Neighboring gene conserved protein, unknown function Neighboring gene HCNGP-like protein Neighboring gene protein Mpv17, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004326.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    3. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 11, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004326.2 Reference assembly

      Range
      97657..101895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351543.1 → XP_001351579.1  vacuolar protein sorting-associated protein 11, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351579.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q8I480
      UniProtKB/TrEMBL
      A0A024XBW9, A0A2I0BTZ3
      Conserved Domains (5) summary
      PTZ00121
      Location:374 → 606
      PTZ00121; MAEBL; Provisional
      CHL00117
      Location:3 → 611
      rpoC2; RNA polymerase beta'' subunit; Reviewed
      cd16688
      Location:1188 → 1224
      RING-H2_Vps11; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 11 homolog (Vps11) and similar proteins
      pfam16228
      Location:899 → 978
      DUF4887; Domain of unknown function (DUF4887)
      pfam12451
      Location:1239 → 1269
      VPS11_C; Vacuolar protein sorting protein 11 C terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8I480.1

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