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    PSBX photosystem II subunit X [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815210, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSBX
    Official Full Name
    photosystem II subunit X
    Primary source
    TAIR:AT2G06520
    Locus tag
    AT2G06520
    See related
    Araport:AT2G06520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    photosystem II subunit X; PSII-X; T12H3.7; T12H3_7
    Summary
    Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.
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    Genomic context

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    See PSBX in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (2587729..2588448, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene hAT family dimerization domain-containing protein Neighboring gene replication protein A 1A Neighboring gene SNF7 family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana. García-Cerdán JG, et al. Plant Cell Physiol, 2009 Feb. PMID 19112079
    2. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Reduction of PsbX leads to reduced levels of functional assembled PSII core complexes, while the light-harvesting antennae are not affected.
      Title: Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_126649.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 

    General protein information

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    Preferred Names
    photosystem II subunit X
    NP_565335.1
    • photosystem II subunit X (PSBX); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbX (InterPro:IPR009518); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2587729..2588448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126649.3 → NP_565335.1  photosystem II subunit X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565335.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0Y5, Q9SKI3
      Conserved Domains (1) summary
      PLN00088
      Location:24 → 115
      PLN00088; predicted protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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