U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LAC13 laccase 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830604, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LAC13
    Official Full Name
    laccase 13
    Primary source
    TAIR:AT5G07130
    Locus tag
    AT5G07130
    See related
    Araport:AT5G07130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    laccase 13; T28J14.70; T28J14_70
    Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LAC13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2209717..2212665)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.B6 Neighboring gene ncRNA Neighboring gene sorting nexin 2B Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification. Rojas-Murcia N, et al. Proc Natl Acad Sci U S A, 2020 Nov 17. PMID 33139576, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    NM_120795.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Casparian strip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    laccase 13
    NP_196330.3
    • laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 3 (TAIR:AT2G30210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2209717..2212665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342922.1 → NP_001330377.1  laccase 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAN2
      Conserved Domains (1) summary
      TIGR03389
      Location:2 → 484
      laccase; plant

    2. NM_001342923.1 → NP_001330376.1  laccase 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAN2
      Conserved Domains (1) summary
      TIGR03389
      Location:2 → 484
      laccase; plant

    3. NM_120795.5 → NP_196330.3  laccase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196330.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYQ2
      UniProtKB/TrEMBL
      A0A178URY6, A0A5S9Y241, A0A7G2F7R6
      Conserved Domains (1) summary
      TIGR03389
      Location:21 → 569
      laccase; plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYQ2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools