U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843402, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ran BP2/NZF zinc finger-like superfamily protein
    Primary source
    TAIR:AT1G70650
    Locus tag
    AT1G70650
    See related
    Araport:AT1G70650
    Gene type
    protein coding
    RNA name
    miRNA
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A18.17; F5A18_17
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (26638075..26642268)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene octicosapeptide/Phox/Bem1p (PB1) domain-containing protein Neighboring gene microRNA ath-MIR777 precursor Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Caleosin-related family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    • mature miRNA accession:MIMAT0003936
    NM_105733.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ran BP2/NZF zinc finger-like superfamily protein
    NP_001185364.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1).
    NP_564993.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 972 Blast hits to 707 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 88; Plants - 413; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26638075..26642268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198435.1 → NP_001185364.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185364.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WTH1, A0A654ET03, F4I6V2
      Conserved Domains (4) summary
      smart00547
      Location:314 → 337
      ZnF_RBZ; Zinc finger domain
      smart00212
      Location:451 → 586
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
      sd00025
      Location:238 → 257
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:279 → 303
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_105733.3 → NP_564993.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDL0, F4I6V3
      Conserved Domains (3) summary
      smart00547
      Location:314 → 337
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:238 → 257
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:279 → 303
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools