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    PGK phosphoglycerate kinase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844293, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGK
    Official Full Name
    phosphoglycerate kinase
    Primary source
    TAIR:AT1G79550
    Locus tag
    AT1G79550
    See related
    Araport:AT1G79550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    phosphoglycerate kinase; PHOSPHOGLYCERATE KINASE; T8K14.3; T8K14_3
    Summary
    Encodes cytosolic phosphoglycerate kinase (PGK).
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    Genomic context

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    See PGK in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (29924023..29926636, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene FTSH protease 12 Neighboring gene ncRNA Neighboring gene kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two phosphoglycerate kinase cDNAs from Arabidopsis thaliana. Löbler M. DNA Seq, 1998 Mar. PMID 10520454
    2. Extracellular ATP functions as an endogenous external metabolite regulating plant cell viability. Chivasa S, et al. Plant Cell, 2005 Nov. PMID 16199612, Free PMC Article
    3. Core genome responses involved in acclimation to high temperature. Larkindale J, et al. Plant Physiol, 2008 Feb. PMID 18055584, Free PMC Article
    4. The link between transcript regulation and de novo protein synthesis in the retrograde high light acclimation response of Arabidopsis thaliana. Oelze ML, et al. BMC Genomics, 2014 Apr 30. PMID 24884362, Free PMC Article
    5. A proteomic analysis of Arabidopsis thaliana seedling responses to 3-oxo-octanoyl-homoserine lactone, a bacterial quorum-sensing signal. Miao C, et al. Biochem Biophys Res Commun, 2012 Oct 19. PMID 22995300

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PGK3 (At1g79550) is a the cytosolic glycolytic enzyme involved in the metabolism and plant growth.
      Title: Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106603.3
    NM_179576.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphoglycerate kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within glycolytic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in apoplast HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    phosphoglycerate kinase
    NP_178073.1
    • phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).
    NP_849907.1
    • phosphoglycerate kinase (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10844 Blast hits to 10818 proteins in 3011 species: Archae - 254; Bacteria - 5218; Metazoa - 451; Fungi - 193; Plants - 517; Viruses - 0; Other Eukaryotes - 4211 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29924023..29926636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179576.3 → NP_849907.1  phosphoglycerate kinase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849907.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3A6, Q56ZW1, Q8LFV7, Q9SAJ4
      UniProtKB/TrEMBL
      A0A178WHC3, A0A5S9WVT0
      Conserved Domains (1) summary
      PLN02282
      Location:1 → 401
      PLN02282; phosphoglycerate kinase

    2. NM_106603.3 → NP_178073.1  phosphoglycerate kinase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178073.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3A6, Q56ZW1, Q8LFV7, Q9SAJ4
      UniProtKB/TrEMBL
      A0A178WHC3, A0A5S9WVT0
      Conserved Domains (1) summary
      PLN02282
      Location:1 → 401
      PLN02282; phosphoglycerate kinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAJ4.1

    Gene LinkOut

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