U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    dcd2B neutral/alkaline nonlysosomal ceramidase family protein [ Dictyostelium discoideum AX4 ]

    Gene ID: 8616181, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    dcd2B
    Gene description
    neutral/alkaline nonlysosomal ceramidase family protein
    Primary source
    dictyBase:DDB_G0268374
    Locus tag
    DDB_G0268374
    See related
    AmoebaDB:DDB_G0268374; VEuPathDB:DDB_G0268374
    Gene type
    protein coding
    RNA name
    neutral/alkaline nonlysosomal ceramidase family protein
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
    Old locus tag
    DDBDRAFT_0202169; DDBDRAFT_0232168; DDB_0202169; DDB_0232168
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_007087.3 (1007048..1009918)

    Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene myb domain-containing protein Neighboring gene nicotinate phosphoribosyltransferase-like protein Neighboring gene NOL1/NOP2/Sun family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_007087.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables N-acylsphingosine amidohydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables N-acylsphingosine amidohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables N-acylsphingosine amidohydrolase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables ceramidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ceramide catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ceramide metabolic process IC
    Inferred by Curator
    more info
    		  
    involved_in long-chain fatty acid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sphingolipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sphingosine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in extracellular region IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Names
    neutral/alkaline nonlysosomal ceramidase family protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007087.3 Reference assembly

      Range
      1007048..1009918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_642280.1 → XP_647372.1  neutral/alkaline nonlysosomal ceramidase family protein [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_647372.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q55G11
      Conserved Domains (3) summary
      PTZ00487
      Location:25 → 718
      PTZ00487; ceramidase; Provisional
      pfam04734
      Location:46 → 554
      Ceramidase_alk; Neutral/alkaline non-lysosomal ceramidase, N-terminal
      pfam17048
      Location:556 → 717
      Ceramidse_alk_C; Neutral/alkaline non-lysosomal ceramidase, C-terminal
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials