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    trmF tRNA uridine 5-carboxymethylaminomethyl modification enzyme [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 937932, updated on 12-Feb-2021

    Summary

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    Gene symbol
    trmF
    Gene description
    tRNA uridine 5-carboxymethylaminomethyl modification enzyme
    Locus tag
    BSU_41010
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU41010
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    Genomic context

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    Sequence:
    NC_000964.3 (4209603..4211489, complement)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene DNA-binding protein Spo0J-like Neighboring gene 7-methylguanosine methyltransferase (16S rRNA, nucleotide G527) Neighboring gene tRNA modification GTPase and tRNA-U34 5-formylation enzyme Neighboring gene SpoIIIJ-associated RNA/ssDNA-binding protein Neighboring gene Sec-independent factor for membrane protein insertion (YidC/SpoIIIJ family)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defining a centromere-like element in Bacillus subtilis by Identifying the binding sites for the chromosome-anchoring protein RacA. Ben-Yehuda S, et al. Mol Cell, 2005 Mar 18. PMID 15780934
    2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
    5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tRNA uridine 5-carboxymethylaminomethyl modification enzyme
    NP_391981.1
    • Evidence 2a: Function from experimental evidences in other organisms; PubMedId: 11914360, 14993678, 17062623, 26735940; Product type e: enzyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      4209603..4211489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_391981.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_391981.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P25812
      Conserved Domains (1) summary
      PRK05192
      Location:5 → 627
      PRK05192; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P25812.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases