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    bdcR putative transcriptional regulator BdcR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948775, updated on 10-Oct-2024

    Summary

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    Official Symbol
    bdcR
    Official Full Name
    putative transcriptional regulator BdcR
    Primary source
    ECOCYC:G7882
    Locus tag
    b4251
    See related
    ASAP:ABE-0013918
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4244; yjgJ
    Summary
    TetR family. [More information is available at EcoGene: EG12529].
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    Genomic context

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    Sequence:
    NC_000913.3 (4474124..4474717)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene RutC family protein YjgH Neighboring gene c-di-GMP-binding biofilm dispersal mediator protein Neighboring gene DUF386 domain-containing toxin-antitoxin biofilm protein TabA Neighboring gene protein YjgL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Engineering a novel c-di-GMP-binding protein for biofilm dispersal. Ma Q, et al. Environ Microbiol, 2011 Mar. PMID 21059164, Free PMC Article
    2. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of primary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transcriptional regulator BdcR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4474124..4474717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418672.4 putative transcriptional regulator BdcR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418672.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN5FBF1
      Conserved Domains (2) summary
      COG1309
      Location:8 → 196
      AcrR; DNA-binding transcriptional regulator, AcrR family [Transcription]
      pfam00440
      Location:22 → 67
      TetR_N; Bacterial regulatory proteins, tetR family
    Nucleotide Protein
    Heading Accession and Version

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