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    H3c15 H3 clustered histone 15 [ Mus musculus (house mouse) ]

    Gene ID: 97114, updated on 28-Oct-2024

    Summary

    Official Symbol
    H3c15provided by MGI
    Official Full Name
    H3 clustered histone 15provided by MGI
    Primary source
    MGI:MGI:2448357
    See related
    Ensembl:ENSMUSG00000081058 AllianceGenome:MGI:2448357
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H3c2; H3c3; H3c4; H3c6; H3c7; H3c13; H3c14; H3-614; H3.2-614; Hist2h3c2; Hist2h3ca1; Hist2h3c2-ps
    Summary
    Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. [provided by RefSeq, Aug 2015]
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    Genomic context

    See H3c15 in Genome Data Viewer
    Location:
    3 F2.1; 3 41.69 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96145424..96146300, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96238479..96239127, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1023 Neighboring gene H2A clustered histone 20 Neighboring gene H2B clustered histone 21 Neighboring gene H2A clustered histone 19 Neighboring gene H2A clustered histone 18

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nucleosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    histone H3.2
    Names
    H3-clustered histone 13
    H3-clustered histone 14
    H3-clustered histone 2
    H3-clustered histone 3
    H3-clustered histone 4
    H3-clustered histone 6
    H3-clustered histone 7
    histone 2, H3c2
    histone 2, H3ca2
    histone cluster 2, H3c2, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_054045.5NP_473386.1  histone H3.2

      See identical proteins and their annotated locations for NP_473386.1

      Status: VALIDATED

      Source sequence(s)
      AC125099
      Consensus CDS
      CCDS57240.1
      UniProtKB/Swiss-Prot
      A3KMN6, P84228, Q60582, Q78E59, Q8CGN9
      UniProtKB/TrEMBL
      A1L0V4, B9EI85
      Related
      ENSMUSP00000135215.3, ENSMUST00000167403.4
      Conserved Domains (1) summary
      PTZ00018
      Location:1136
      PTZ00018; histone H3; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      96145424..96146300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)