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    LOC100217237 uncharacterized LOC100217237 [ Zea mays ]

    Gene ID: 100217237, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100217237
    Gene description
    uncharacterized LOC100217237
    Locus tag
    ZEAMMB73_Zm00001d005016
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    EREB85; GRMZM2G124524
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (153662426..153668077)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (153920669..153926320)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103647128 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene uncharacterized LOC109944310 Neighboring gene L-2-hydroxyglutarate dehydrogenase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ethylene-responsive transcription factor WRI1
    Names
    AP2-EREBP transcription factor
    WRI1 transcription factor 1
    WRI1 transcription factor1
    wrinkled1 transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143592.1 → NP_001137064.1  Ethylene-responsive transcription factor WRI1

      See identical proteins and their annotated locations for NP_001137064.1

      Status: PROVISIONAL

      Source sequence(s)
      BT038184
      UniProtKB/TrEMBL
      B4FM46, B6T5I4
      Conserved Domains (3) summary
      cd00018
      Location:166 → 227
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
      pfam05132
      Location:234 → 305
      RNA_pol_Rpc4; RNA polymerase III RPC4
      cl00033
      Location:65 → 137
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      153662426..153668077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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