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    MAP3K5-AS1 MAP3K5 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928461, updated on 10-Oct-2023

    Summary

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    Official Symbol
    MAP3K5-AS1provided by HGNC
    Official Full Name
    MAP3K5 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40358
    See related
    Ensembl:ENSG00000234263 AllianceGenome:HGNC:40358
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 8.7) See more
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    Genomic context

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    Location:
    6q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (136629114..136648198)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (137817297..137836371)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (136950252..136969336)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:136870396-136870934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17572 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:136871473-136872010 Neighboring gene RN7SK pseudogene 299 Neighboring gene MPRA-validated peak6148 silencer Neighboring gene MAP7 antisense RNA 1 Neighboring gene mitogen-activated protein kinase kinase kinase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25115 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:136933733-136934303 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:136934304-136934873 Neighboring gene RNA, 5S ribosomal pseudogene 219 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25116 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25118 Neighboring gene uncharacterized LOC124901410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25121 Neighboring gene Sharpr-MPRA regulatory region 8718 Neighboring gene Sharpr-MPRA regulatory region 14394 Neighboring gene MAP3K5 antisense RNA 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125858.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI138300, BX093515, BX398118
      Related
      ENST00000432477.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      136629114..136648198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      137817297..137836371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases