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    LINC02940 long intergenic non-protein coding RNA 2940 [ Homo sapiens (human) ]

    Gene ID: 102724740, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02940provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2940provided by HGNC
    Primary source
    HGNC:HGNC:55955
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCMAlnc
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    21q22.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (38985351..39019256, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (37370011..37409393, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ETS2 antisense RNA 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:40275087-40276286 Neighboring gene CAGE-defined mid-level expression enhancer in LOC400867 intron Neighboring gene ribosomal protein SA pseudogene 64 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286344-40286844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40286845-40287345 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40316387-40317085 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:40318461-40318589 Neighboring gene long intergenic non-protein coding RNA 1700 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18464 Neighboring gene VISTA enhancer hs1516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40393817-40394317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40395325-40395890 Neighboring gene long intergenic non-protein coding RNA 2943 Neighboring gene Sharpr-MPRA regulatory region 7751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:40434218-40434800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:40447061-40447847 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13318 Neighboring gene ribosomal protein L23a pseudogene 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CCMAlnc Promotes the Malignance of Colorectal Cancer by Modulating the Interaction Between miR-5001-5p and Its Target mRNA. Yan Y, et al. Front Cell Dev Biol, 2020. PMID 33681178, Free PMC Article
    2. Novel genes identified in a high-density genome wide association study for nicotine dependence. Bierut LJ, et al. Hum Mol Genet, 2007 Jan 1. PMID 17158188, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Novel genes identified in a high-density genome wide association study for nicotine dependence.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • colorectal cancer metastasis-associated lncRNA

    Clone Names

    • AF064858.8, AF064858.11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      38985351..39019256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007067867.1 RNA Sequence

    2. XR_007067868.1 RNA Sequence

    3. XR_007067869.1 RNA Sequence

    4. XR_007067866.1 RNA Sequence

    5. XR_007067865.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      37370011..37409393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007090178.1 RNA Sequence

    2. XR_007090177.1 RNA Sequence

    3. XR_007090179.1 RNA Sequence

    4. XR_007090176.1 RNA Sequence

    5. XR_007090174.1 RNA Sequence

    6. XR_007090175.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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