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    LOC103648032 probable indole-3-acetic acid-amido synthetase GH3.13 [ Zea mays ]

    Gene ID: 103648032, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103648032
    Gene description
    probable indole-3-acetic acid-amido synthetase GH3.13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G410567
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (230170544..230183853, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (230685600..230698862, complement)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100278851 Neighboring gene Rubredoxin-like superfamily protein Neighboring gene metal transporter Nramp4 Neighboring gene uncharacterized LOC109944430

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of maize long non-coding RNAs responsive to drought stress. Zhang W, et al. PLoS One, 2014. PMID 24892290, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable indole-3-acetic acid-amido synthetase GH3.13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      230170544..230183853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035965536.1 → XP_035821429.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    2. XM_023301711.2 → XP_023157479.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    3. XM_023301709.2 → XP_023157477.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    4. XM_035965540.1 → XP_035821433.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    5. XM_035965538.1 → XP_035821431.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    6. XM_035965537.1 → XP_035821430.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    7. XM_023301712.2 → XP_023157480.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    8. XM_035965539.1 → XP_035821432.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter

    9. XM_023301710.2 → XP_023157478.1  probable indole-3-acetic acid-amido synthetase GH3.13

      UniProtKB/TrEMBL
      A0A3L6G3G6, A0A804MUX8
      Conserved Domains (1) summary
      cl21606
      Location:53 → 651
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version

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