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SRX13089925: Hybrid-enriched UCE sequences of Acanthomorph fishes
1 ILLUMINA (Illumina HiSeq 4000) run: 1.3M spots, 403.1M bases, 162.9Mb downloads

Design: Libraries were prepared from genomic DNA using Kapa Library Prep kits and iTru5 and iTru7 adapters. An RNA probe set designed for 1314 ultraconserved elements (UCEs) in acanthomorph fishes was used for hybrid enrichment, before illumina 150 paired end sequencing.
Submitted by: Yale University
Study: Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
show Abstracthide Abstract
Spiny-rayed fishes (Acanthomorpha) dominate modern marine habitats and comprise more than a quarter of all living vertebrate species1-3. It is believed that this dominance resulted from explosive lineage and phenotypic diversification coincident with the Cretaceous-Paleogene (K-Pg) mass-extinction event4. It remains unclear, however, if living acanthomorph diversity is the result of a punctuated burst or gradual accumulation of diversity following the K-Pg. We assess these hypotheses with a time-calibrated phylogeny inferred using ultraconserved elements from a sampling of species that represent over 91% of all acanthomorph families, as well as an extensive body shape dataset of extant species. Our results indicate that several million years after the end-Cretaceous, acanthomorphs underwent a prolonged and significant expansion of morphological disparity primarily driven by changes in body elongation, and that acanthomorph lineages containing the bulk of the living species diversity originated throughout the Cenozoic. These acanthomorph lineages radiated into distinct regions of morphospace and retained their iconic phenotypes, including a large group of laterally compressed reef fishes, fast-swimming open-ocean predators, bottom-dwelling flatfishes, seahorses, and pufferfishes. The evolutionary success of spiny-rayed fishes is the culmination of a post K-Pg adaptive radiation in which rates of lineage diversification were decoupled from periods of high phenotypic disparity.
Sample:
SAMN22936085 • SRS11026417 • All experiments • All runs
Library:
Name: Halobatrachus_didactylus_17238
Instrument: Illumina HiSeq 4000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 1.3M spots, 403.1M bases, 162.9Mb
Run# of Spots# of BasesSizePublished
SRR168970571,334,754403.1M162.9Mb2022-08-09

ID:
17800340

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