U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX501968: Whole genome shotgun sequencing of Listeria monocytogenes str. CFSAN001446 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 412,738 spots, 196.9M bases, 103.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: Outbreak study
PRJNA81699 • SRP040634 • All experiments • All runs
show Abstracthide Abstract
Genome sequencing project
Sample: Pathogen bacterial, environmental sample from Listeria monocytogenes LIS0063
SAMN01816208 • SRS582986 • All experiments • All runs
Organism: Listeria monocytogenes LIS0063
Library:
Name: Listeria monocytogenes str. CFSAN001446 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes str. CFSAN001446.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 412,738 spots, 196.9M bases, 103.5Mb
Run# of Spots# of BasesSizePublished
SRR1206158412,738196.9M103.5Mb2014-03-27

ID:
699864

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...