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SRX1961376: genomic sequencing from a single Barbulanympha cell (Barb4) collected from the hindgut of Cryptocercus punctulatus
1 ILLUMINA (Illumina HiSeq 2000) run: 44.3M spots, 8.9G bases, 5.6Gb downloads

Design: DNA extracted from a single Barbulanympha cell, DNA amplified using Genomiphi v2 kit (GE Healthcare Life Sciences) and mechanically sheared with an ultrasonicator (Covaris), sequencing library generated using the TruSeq kit (Illumina).
Submitted by: University of British Columbia
Study: Barbulanympha ectosymbiont genomes from the hindgut of the wood-eating cockroach Cryptocercus punctulatus
show Abstracthide Abstract
Barbulanympha is a unicellular eukaryotic (protist) symbiont that digests lignocellulose in the hindgut of the wood-eating cockroach, Cryptocercus punctulatus. In addition to being symbiotic with its insect host, Barbulanympha is itself host to thousands of Bacteroidales bacterial symbionts attached to its cell surface. Single cells of Barbulanympha were isolated and genomic sequences of the ectosymbionts were obtained to understand the evolution of ectosymbiosis, especially in comparison to endosymbiosis. The ectosymbiont genome was also used to investigate the role of nitrogen in driving the symbiosis with Barbulanympha and C. punctulatus.
Sample: Barbulanympha ectosymbiont Barb4 from the hindgut of Cryptocercus punctulatus
SAMN03428873 • SRS1571332 • All experiments • All runs
Library:
Name: Barb4
Instrument: Illumina HiSeq 2000
Strategy: WGA
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 44.3M spots, 8.9G bases, 5.6Gb
Run# of Spots# of BasesSizePublished
SRR393194644,318,7478.9G5.6Gb2016-07-24

ID:
2822980

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