MDA of marine diplonemid cell 21sb - SRA

SRX2014521: MDA of marine diplonemid cell 21sb
1 ILLUMINA (Illumina MiSeq) run: 5M spots, 3G bases, 1.5Gb downloads

Design: Single protist cells were isolated from sea water. Single-cell genome amplification via MDA using REPLI-g UltraFast Mini Kit. Sample cleanup, library preparation (Illumina TruSeq), and sequencing (Illumina MiSeq PE 300 bp) were conducted at McGill University and Gnome Qubec Innovation Centre (samples 3, 13, 21, 27, 37, and 47) and University of California, Los Angeles Genotyping and Sequencing (samples 1sb, 4sb, 9sb, 21sb, and 21).

Submitted by: University of British Columbia

Study: Single-cell genomic analysis of 10 'wild-caught' diplonemids

PRJNA338474 • SRP081436 • All experiments • All runs

show Abstracthide Abstract

In this study, we generated single-cell genomic data from 10 marine diplonemids, isolated off of the California coast. Marine diplonemids are increasingly being recognized as diverse and abundant constituents of oceanic plankton, but no one had knowingly observed (or derived genomic information from) these cells until the present study.

Sample: A planktonic diplonemid isolated in the Northeastern Pacific Ocean (California)

SAMN05559144 • SRS1611225 • All experiments • All runs

Organism: Diplonemida sp. 21sb RG-2016

Library:

Name: MI.M00833_0399.001.Index_3.21sb

Instrument: Illumina MiSeq

Strategy: WGA

Source: GENOMIC

Selection: MDA

Layout: PAIRED

Runs: 1 run, 5M spots, 3G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR4022277	4,967,779	3G	1.5Gb	2016-08-17

ID:: 2911814

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity