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SRX2361298: Recovery of uncultivated bacterial and archaeal genomes substantially flesh out the tree of life: Sample Methanomassiliicoccales archaeon UBA147
1 ILLUMINA (Illumina HiSeq 2000) run: 559,451 spots, 129.6M bases, 85.3Mb downloads

Design: Genome coverage :60.39 Assembly method and version: CLC de novo assembler4.4.1 Mapping method and version: BWA (BWA-MEM)0.7.12-r1039
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Methanomassiliicoccales archaeon UBA147 genome recovered from SRX327722
SAMN06027036 • SRS1809676 • All experiments • All runs
Library:
Name: SRX327722.b90
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Experiment attributes:
alignment_software: BWA (BWA-MEM)
Runs: 1 run, 559,451 spots, 129.6M bases, 85.3Mb
Run# of Spots# of BasesSizePublished
SRR5037160559,451129.6M85.3Mb2017-09-14

ID:
3444501

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