Whole genome shotgun sequencing of Escherichia coli serovar O36 by Il... - SRA

SRX1984089: Whole genome shotgun sequencing of Escherichia coli serovar O36 by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.1M spots, 559.9M bases, 234.1Mb downloads

External Id: EXT00202106

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA230969 • SRP058582 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.

Sample: Pathogen: environmental/food/other sample from Escherichia sp.

SAMN04992208 • SRS1589766 • All experiments • All runs

Organism: Escherichia sp. MOD1-EC6842

Library:

Name: Escherichia coli serovar O36 Nextera XT shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O36.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 2.1M spots, 559.9M bases, 234.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR3972138	2,101,965	559.9M	234.1Mb	2016-07-28

ID:: 2855883

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity