Whole genome sequencing of Campylobacter sp. strains - SRA

SRX16774422: Whole genome sequencing of Campylobacter sp. strains
1 ILLUMINA (Illumina MiSeq) run: 738,446 spots, 109.1M bases, 56Mb downloads

Design: Illumina libraries were prepared for all strains using the KAPA Low-Throughput Library Preparation Kit with Standard PCR Amplification Module (Kapa Biosystems, Wilmington, MA), following manufacturer's instructions except for the following changes: 750 ng DNA was sheared at 30 psi for 40 s and size selected to 700-770 bp following Illumina protocols. Standard desalting TruSeq LT and PCR Primers were ordered from Integrated DNA Technologies (Coralville, IA) and used at 0.375 and 0.5 M final concentrations, respectively. PCR was reduced to 3-5 cycles. Libraries were quantified using the KAPA Library Quantification Kit (Kapa), except with 10 l volume and 90-s annealing/extension PCR, then pooled and normalized to 4 nM. Pooled libraries were requantified by ddPCR on a QX200 system (Bio-Rad), using the Illumina TruSeq ddPCR Library Quantification Kit and following manufacturer's protocols, except with an extended 2-min annealing/extension time. The libraries were sequenced 2 250 bp paired end v2 on a MiSeq instrument (Illumina) at 13.5 pM, following manufacturer's protocols.

Submitted by: USDA, ARS, WRRC

Study: Whole genome sequencing of Campylobacter sp. strains

PRJNA865355 • SRP389465 • All experiments • All runs

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Campylobacter genome sequencing

Sample:

SAMN14886914 • SRS14400589 • All experiments • All runs

Organism: Campylobacter sp. LMG 7929

Library:

Name: RM5118WGS_MiSeq

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 738,446 spots, 109.1M bases, 56Mb

Run	# of Spots	# of Bases	Size	Published
SRR20754179	738,446	109.1M	56Mb	2022-08-02

ID:: 23533516

SRA

Sequence Read Archive

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