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SRX22138925: UCE target enrichment of Rinamba sp. CNIN4360
1 ILLUMINA (Illumina HiSeq 2500) run: 2M spots, 600.7M bases, 244.4Mb downloads

Design: Genomic DNA was extracted from voucher specimens using a non-destructive technique with the EZ-10 Spin Column Genomic DNA minipreps Kit (Bio Basic, Toronto, Canada) following the manufacturers protocol. DNA extractions were quantified using Qubit 4.0 (Life Technologies). For each sample, up to 100 ng of DNA was fragmented to an average fragment distribution of 400-600 bp using a Bioruptor Pico sonication device. Genomic libraries were constructed following Branstetter et als (2017) protocol using the Kapa Hyper Prep library preparation kit (Kapa Biosystems Inc., Wilmington, MA, USA) and TruSeq-style dual-indexing barcodes (Glenn et al., 2019). Target enrichment was performed using the enhanced commercial myBaits UCE set (Hym v1, ArborBiosciences, Ann Arbor, MI, USA) that were designed for Hymenoptera and developed by Faircloth et al. (2015) and Branstetter et al. (2017). Enriched libraries were pooled at equimolar ratios for sequencing. The sequencing service was conducted in an Illumina HiSeq 2500 instrument (PE125, v4 chemistry) at Admera Health BioPharma Services (New Jersey, USA).
Submitted by: Instituto de Biologia, Universidad Nacional Autonoma de Mexico
Study: Mitogenome architecture supports the non-monophyly of the cosmopolitan parasitoid wasp subfamily Doryctinae (Hymenoptera: Braconidae) recovered by nuclear and mitochondrial phylogenomics
show Abstracthide Abstract
Genomic DNA was extracted from voucher specimens using a non-destructive technique with the EZ-10 Spin Column Genomic DNA minipreps Kit (Bio Basic, Toronto, Canada) following the manufacturers protocol. DNA extractions were quantified using Qubit 4.0 (Life Technologies). For each sample, up to 100 ng of DNA was fragmented to an average fragment distribution of 400-600 bp using a Bioruptor Pico sonication device. Genomic libraries were constructed following the protocol described by Branstetter et al (2017) using the Kapa Hyper Prep library preparation kit (Kapa Biosystems Inc., Wilmington, MA, USA) and TruSeq-style dual-indexing barcodes (Glenn et al., 2019). Target enrichment was performed using the enhanced commercial myBaits UCE set (Hym v1, ArborBiosciences, Ann Arbor, MI, USA) that were designed for Hymenoptera and developed by Faircloth et al. (2015) and Branstetter et al. (2017). Enriched libraries were pooled at equimolar ratios for sequencing. The sequencing service was conducted in an Illumina HiSeq 2500 instrument (PE125, v4 chemistry) at Admera Health BioPharma Services (New Jersey, USA).
Sample:
SAMN37721624 • SRS19199792 • All experiments • All runs
Organism: Rinamba sp.
Library:
Name: CNIN4360
Instrument: Illumina HiSeq 2500
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 2M spots, 600.7M bases, 244.4Mb
Run# of Spots# of BasesSizePublished
SRR264342172,002,457600.7M244.4Mb2024-01-31

ID:
30091077

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