UCE target enrichment of Colastomion sp. - SRA

SRX8368003: UCE target enrichment of Colastomion sp.
1 ILLUMINA (NextSeq 500) run: 2.4M spots, 715.7M bases, 284.3Mb downloads

Design: Genomic DNA was extracted using a non-destructive technique with the EZ-10 Spin Kit minipreps DNA Genomic Column Kit (BIOBasic, Toronto, Ontario, Canada) following the manufacturers protocol. DNA fragmentation was performed with the Qsonica Q800R sonicator (Qsonica 457 LLC, Newton, CT). The DNA quantification was performed using a Qubit 2.0 fluorometer (Invitrogen, Life Technologies, CA, USA). Genomic libraries were prepared following the protocol described by Branstetter et al. (2017) using the Kapa Hyper Prep kit (Kapa Biosystems Inc., Wilmington, MA), and the TruSeq-style dual-indexing adapters (Glenn et al. 2016).

Submitted by: Instituto de Biologia. Universidad Nacional Autonoma de Mexico.

Study: Phylogenomics of the lepidopteran endoparasitoid wasp subfamily Rogadinae (Hymenoptera: Braconidae) and related subfamilies

PRJNA633180 • SRP262442 • All experiments • All runs

show Abstracthide Abstract

A phylogenomic study of one of the major groups in the highly speciose family Braconidae, the subfamily Rogadinae, is provided. The analyses are based on data from genomic ultraconserved elements (UCEs), recovering the monophyly of Rogadinae including the tribe Betylobraconini. It was found that the closely related subfamilies Lysiterminae and Hormiine are not reciprocally monophyletic, based on which the synonymy of the mentioned groups is suggested.

Sample: Phylogenomics of the lepidopteran endoparasitoid wasp subfamily Rogadinae (Hymenoptera: Braconidae) and related subfamilies

SAMN14937032 • SRS6683628 • All experiments • All runs

Organism: Colastomion sp. CNIN 4172

Library:

Name: CNIN4172

Instrument: NextSeq 500

Strategy: Targeted-Capture

Source: GENOMIC

Selection: Reduced Representation

Layout: PAIRED

Runs: 1 run, 2.4M spots, 715.7M bases, 284.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR11817020	2,385,758	715.7M	284.3Mb	2020-08-21

ID:: 10883293

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