U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX19207516: Linked read sequencing of Diplotaxis muralis
1 ILLUMINA (Illumina HiSeq 3000) run: 308.4M spots, 95G bases, 36.8Gb downloads

Design: DNA was extracted with the DNeasy Plant Mini Kit (QIAGEN) following the manufacturer's instructions and size-selected for fragments larger than 40 Kbp using BluePippin (SAGE Sciences). Quality control of the size-selected DNA was performed on Qubit and TapeStation. A 10x linked-read library (Zheng et al., 2016; Marks et al., 2017) was created for each species using one nanogram of DNA
Submitted by: Heinrich-Heine University of Duesseldorf
Study: C4 Breed - Comparative genomics of C3 vs C3-C4 plants in Brassicaceae familly.
show Abstracthide Abstract
This project intends to sequence the genome and transcriptome of several Brassicaceae species, including C3 and C3-4 intermediates, and thereafter to pinpoint genetic differences between groups with different photosynthesis kinds. By cross-referencing genetic data with detailed phenotype evaluation, we aim to identify new genetic connections to the development of C3-4 intermediacy.
Sample:
SAMN31871756 • SRS16616101 • All experiments • All runs
Library:
Name: DM_linked
Instrument: Illumina HiSeq 3000
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 308.4M spots, 95G bases, 36.8Gb
Run# of Spots# of BasesSizePublished
SRR23263288308,356,99595G36.8Gb2023-01-29

ID:
26409805

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...