U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX030882: Illumina whole genome shotgun sequencing of genomic DNA paired-end libraries 'Solexa-21512' and 'Solexa-20776' containing 24 pooled Streptococcus pyogenes MGAS15007 samples
25 ILLUMINA (Illumina Genome Analyzer II) runs: 55.9M spots, 8G bases, 3.4Gb downloads

UUID: 1d11dbab-72d6-4867-bd76-8d15b19f6356
Design: Provide sequencing coverage to use in comparative SNP analysis.
Submitted by: Broad Institute (BI)
Study: Streptococcus pyogenes
show Abstracthide Abstract
GAS (group A Streptococcus) is a Gram-positive bacterium that causes several diseases in humans, including pharyngitis and/or tonsillitis, skin infections (impetigo, erysipelis, and other forms of pyoderma), acute rheumatic fever (ARF), scarlet fever (SF), poststreptococcal glomerulonephritis, a toxic-shock-like syndrome, and necrotizing fasciitis (NF). The overall goal of this project is to provide unique understanding, at the nucleotide level, of the molecular genetic events contributing to epidemics caused by a bacterial pathogen, including antibiotic-resistant strains. The project will exploit the availability of a unique sample of 362 serotype M3 strains of group A Streptococcus recovered during an ongoing study of invasive infections in Ontario, Canada.
Library:
Name: Solexa-20776&Solexa-21512
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward barcode
Group tagBasecalls
tagged_214AGGATCTA
tagged_223AGGTTATC
tagged_250ATAGCGTC
tagged_293ATTCTAGG
tagged_298ATTGTCTG
tagged_352CAGCAAGG
tagged_388CCAGAGCT
tagged_38AAGACACT
tagged_426CCTATGCC
tagged_438CCTTCGCA
tagged_498CGTTACCA
tagged_559GAACCTAG
tagged_564GAAGAAGT
tagged_579GACAGTAA
tagged_745GTCATCTA
tagged_752GTCGCCTT
tagged_754GTCTGATG
tagged_786TAATGAAC
tagged_851TCCAGCAA
tagged_861TCCTTGGT
tagged_866TCGCCTTG
tagged_875TCTCGGTC
tagged_938TTACGCAC
tagged_959TTGAATAG
77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: WGSWithRef
gssr_ids: 35895.1 35897.1 35899.1 35901.1 35911.1 35913.1 35 (show full text...)(hide...)
35895.1 35897.1 35899.1 35901.1 35911.1 35913.1 35915.1 35949.1 35963.1 35965.1 35967.1 35969.1 35979.1 35981.1 35983.1 35985.1 35995.1 35997.1 35999.1 36001.1 36011.1 36013.1 36015.1 36017.1
lsids: BROAD:SEQUENCING_SAMPLE:35895.1 BROAD:SEQUENCING_S (show full text...)(hide...)
BROAD:SEQUENCING_SAMPLE:35895.1 BROAD:SEQUENCING_SAMPLE:35897.1 BROAD:SEQUENCING_SAMPLE:35899.1 BROAD:SEQUENCING_SAMPLE:35901.1 BROAD:SEQUENCING_SAMPLE:35911.1 BROAD:SEQUENCING_SAMPLE:35913.1 BROAD:SEQUENCING_SAMPLE:35915.1 BROAD:SEQUENCING_SAMPLE:35949.1 BROAD:SEQUENCING_SAMPLE:35963.1 BROAD:SEQUENCING_SAMPLE:35965.1 BROAD:SEQUENCING_SAMPLE:35967.1 BROAD:SEQUENCING_SAMPLE:35969.1 BROAD:SEQUENCING_SAMPLE:35979.1 BROAD:SEQUENCING_SAMPLE:35981.1 BROAD:SEQUENCING_SAMPLE:35983.1 BROAD:SEQUENCING_SAMPLE:35985.1 BROAD:SEQUENCING_SAMPLE:35995.1 BROAD:SEQUENCING_SAMPLE:35997.1 BROAD:SEQUENCING_SAMPLE:35999.1 BROAD:SEQUENCING_SAMPLE:36001.1 BROAD:SEQUENCING_SAMPLE:36011.1 BROAD:SEQUENCING_SAMPLE:36013.1 BROAD:SEQUENCING_SAMPLE:36015.1 BROAD:SEQUENCING_SAMPLE:36017.1
material_type: Genomic DNA
projects: G2955 G2957 G2959 G2961 G2971 G2973 G2975 G2979 G2 (show full text...)(hide...)
G2955 G2957 G2959 G2961 G2971 G2973 G2975 G2979 G2981 G2983 G2985 G2987 G2989 G3003 G3005 G3007 G3009 G3011 G3013 G3017 G3031 G3033 G3035 G3037
work_request: 21008
Pipeline: show...hide...
NameStepProgramVersion
2010-03-10 18:33:32.0Rig Software2.6.25
base caller2010-03-10 18:33:19.0GAPipeline1.6.0a16
Runs: 25 runs, 55.9M spots, 8G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR0642583,799,855547.2M191.6Mb2010-11-18
SRR0642592,194,876316.1M137.7Mb2010-11-13
SRR0642602,184,172314.5M137.3Mb2010-11-13
SRR0642612,290,833329.9M144.9Mb2010-11-13
SRR0642622,177,356313.5M136.1Mb2010-11-13
SRR0642632,209,417318.2M138.1Mb2010-11-13
SRR0642642,074,178298.7M131.2Mb2010-11-13
SRR0642652,241,054322.7M140.1Mb2010-11-13
SRR0642662,120,486305.3M133.6Mb2010-11-13
SRR0642672,139,523308.1M134.9Mb2010-11-13
SRR0642682,149,608309.5M135.9Mb2010-11-13
SRR0642692,231,019321.3M140.5Mb2010-11-13
SRR0642702,142,687308.5M135.1Mb2010-11-13
SRR0642712,206,601317.8M138.8Mb2010-11-13
SRR0642722,219,278319.6M139.6Mb2010-11-13
There are 10 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS0248873.8M547.2M
2SRS107504 : tagged_38_AAGACACT2.2M322.7M
3SRS107505 : tagged_352_CAGCAAGG2.1M298.7M
4SRS107506 : tagged_564_GAAGAAGT2.2M317.8M
5SRS107507 : tagged_851_TCCAGCAA2.2M310.9M
6SRS107508 : tagged_214_AGGATCTA2.2M316.1M
7SRS107509 : tagged_388_CCAGAGCT2.1M305.3M
8SRS107510 : tagged_579_GACAGTAA2.2M319.6M
9SRS107511 : tagged_298_ATTGTCTG2.2M318.2M
10SRS107512 : tagged_559_GAACCTAG2.1M308.5M
11SRS107513 : tagged_786_TAATGAAC2.3M329.4M
12SRS107514 : tagged_959_TTGAATAG2.3M331.6M
13SRS107515 : tagged_754_GTCTGATG2.1M296.3M
14SRS107516 : tagged_938_TTACGCAC2.1M301.2M
15SRS107517 : tagged_293_ATTCTAGG2.2M313.5M
16SRS107518 : tagged_498_CGTTACCA2.2M321.3M
17SRS107519 : tagged_250_ATAGCGTC2.3M329.9M
18SRS107520 : tagged_438_CCTTCGCA2.1M309.5M
19SRS107521 : tagged_752_GTCGCCTT2.2M310.9M
20SRS107522 : tagged_875_TCTCGGTC2M282.8M
21SRS107523 : tagged_866_TCGCCTTG2M292.6M
22SRS107524 : tagged_223_AGGTTATC2.2M314.5M
23SRS107525 : tagged_426_CCTATGCC2.1M308.1M
24SRS107526 : tagged_745_GTCATCTA2.2M315.5M
25SRS107527 : tagged_861_TCCTTGGT2.3M324.5M
26 : defaultn/an/a

ID:
37592

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...