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DRX011555: RNA-seq from two kinds of Ae. tauschii, PI476874
1 LS454 (454 GS FLX Titanium) run: 848,953 spots, 440.1M bases, 978.8Mb downloads

Submitted by: SHIGA_PREF
Study: RNASeq from spikes of Aegilops tauschii
show Abstracthide Abstract
Genome-wide marker development in the wheat D genome based on transcirpts-derived SNP of wild wheat progenitor Aegilops tauschii. Iehisa JCM, Shimizu A., Sato K., Nishijima R., Sakaguchi K., Matsuda R., Nasuda S, Takumi S.(2014) Theoretical and Applied Genetics 127:261-271. DOI:10.1007/s00122-013-2215-5
Sample: Aegilops tauschii PI476874
SAMD00008957 • DRS011391 • All experiments • All runs
Library:
Name: HSKS6VI02
Instrument: 454 GS FLX Titanium
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: Total RNA was isolated from spikes (about 3-6 cm in length) before heading, using an RNeasy Plant Mini Kit (QIAGEN, Hilden, Germany). mRNA was isolated from 48 ?g of RNA using an mRNA Purification Kit (Takara-Bio, Ohtsu, Japan). A 200 ng aliquot of mRNA was used to fragment the mRNA and synthesize cDNA from it using a cDNA Synthesis System (Roche Diagnostics, Mannheim, Germany). Approximately 1000,000,000 adapter-ligated cDNA molecules from the samples were used for library preparation using a GS FLX Titanium Rapid Library Preparation Kit (Roche Diagnostics).
Spot descriptor:
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Experiment attributes:
Submitters: Kazuhiro Sato
Pipeline: show...hide...
NameStepPrev StepProgramVersion
primary analysis1NIL454 Basecaller1
Runs: 1 run, 848,953 spots, 440.1M bases, 978.8Mb
Run# of Spots# of BasesSizePublished
DRR012599848,953440.1M978.8Mb2014-05-14

ID:
722701

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