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DRX166250: Illumina HiSeq 2500 paired end sequencing of SAMD00169226
1 ILLUMINA (Illumina HiSeq 2500) run: 24.7M spots, 4.9G bases, 3Gb downloads

Submitted by: Tokyo Univetsity of Agriculture (TUAGRI)
Study: The transcriptome analysis of salinas type and empire type in crisphead lettuce
show Abstracthide Abstract
Lettuce has been cultivated throughout the year, and traditionally grown outdoors except for butterhead lettuce. For cool-season vegetables such as lettuce, environmental factors, especially heat stress are negatively effect on yield and quality. Accordingly, for stable production for hot-season, higher temperature adaptability is critical trait for lettuce cultivars. Crisphead lettuce has two types, empire type and salinas type. The empire type has deeply serrated undulation leaf with very crisp, and the salinas type has wavy leaf with softer texture. The serrated undulation leaf of empire type was clearly associated with high incidence of tipburn disorder. Tipburn is a complex and unpredictable disorder that involves a collapse and necrosis of the apex and margins of actively growing leaves, which occurs under warm growing conditions. We performed transcriptome analysis to investigate gene associated with leaf marginal serration.
Sample: cv. ShinanoGreen3
SAMD00169226 • DRS119418 • All experiments • All runs
Organism: Lactuca sativa
Library:
Name: ShinanoGreen3
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol:
Spot descriptor:
forward101  reverse

Runs: 1 run, 24.7M spots, 4.9G bases, 3Gb
Run# of Spots# of BasesSizePublished
DRR17568224,709,3354.9G3Gb2020-01-09

ID:
9821936

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