Illumina HiSeq 4000 paired end sequencing of SAMD00206243 - SRA

DRX198753: Illumina HiSeq 4000 paired end sequencing of SAMD00206243
1 ILLUMINA (Illumina HiSeq 4000) run: 13.8M spots, 4.1G bases, 1.4Gb downloads

Submitted by: IBRC

Study: The Draft Genome of Dioscorea rotundata version 2 assembled with long-reads generated by Oxford Nanopore Technologies.

PRJDB8681 • DRP005563 • All experiments • All runs

show Abstracthide Abstract

Guinea yam (Dioscorea rotundata) is one of the most important staple foods in West and Central Africa. Here we reconstructed the reference genome of D. rotundata with long-reads generated by PromethION sequencer of Oxford Nanopore Technologies, instead of mate-pair jump reads (in version 1). The contigs included in the reference genome were assembled by Flye assembler and polished by pilon.

Sample: Dioscorea rotundata TDr97_00777 Male flower early_3

SAMD00206243 • DRS164928 • All experiments • All runs

Organism: Dioscorea cayenensis subsp. rotundata

Library:

Name: Dioscorea rotundata TDr97_00777 Male flower early_3

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: PAIRED

Construction protocol:

Spot descriptor:

1 forward151 reverse

Runs: 1 run, 13.8M spots, 4.1G bases, 1.4Gb

Run	# of Spots	# of Bases	Size	Published
DRR208403	13,773,112	4.1G	1.4Gb	2020-12-08

ID:: 12610114

SRA

Sequence Read Archive

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