Illumina HiSeq 2500 sequencing of SAMD00213347 - SRA

DRX209845: Illumina HiSeq 2500 sequencing of SAMD00213347
1 ILLUMINA (Illumina HiSeq 2500) run: 24.4M spots, 1.2G bases, 476.8Mb downloads

Submitted by: RIKEN

Study: Transcriptomes in tissues of crab-eating macaques

PRJDB9546 • DRP005990 • All experiments • All runs

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This study aims to determine transcription start sites and gene structure of crab-eating macaques (Macaca fascicularis) in a genome-wide manner. To this end, we extracted total RNA in tissue samples from the whole body of crab-eating macaques, and then performed CAGE (Cap Analysis of Gene Expression) and RNA-seq.

Sample: Colon of a crab-eating macaque [CE2009F; Female; 11 y 8 m old]

SAMD00213347 • DRS129815 • All experiments • All runs

Organism: Macaca fascicularis

Library:

Instrument: Illumina HiSeq 2500

Strategy: OTHER

Source: TRANSCRIPTOMIC

Selection: CAGE

Layout: SINGLE

Construction protocol: "Morioka M.S. et al. (2020) Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites. In: Boegel S. (eds) Bioinformatics for Cancer Immunotherapy. Methods in Molecular Biology, vol 2120. Humana, New York, NY"

Spot descriptor:

1 forward

Runs: 1 run, 24.4M spots, 1.2G bases, 476.8Mb

Run	# of Spots	# of Bases	Size	Published
DRR219532	24,412,494	1.2G	476.8Mb	2020-04-04

ID:: 10497286

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