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ERX1417792: Illumina Genome Analyzer IIx sequencing
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 27.4M spots, 2.1G bases, 1.7Gb downloads

Design: Total RNA (i.e. RIN ≥ 8) extracted from the hippocampi of 24 randomly selected quail were used for the RNA-sequencing. For each tissue, 3 RNA biological replicates were prepared by pooling RNA from 4 birds (2 males and 2 females) per treatment. Each pool contained the same amount of RNA from each individual bird (500ng each, 2000ng in total). The same pools of individuals were used for each tissue. Birds sharing the same mother were avoided where possible within the same pool to control for potential pseudo-replication
Submitted by: Glasgow Polyomics
Study: Early life stress alters the brain transcriptome in the Japanese quail
show Abstracthide Abstract
Exposure to stress during early development can permanently influence an individual’s physiology and behavior, and affect its subsequent health. The extent to which elevated glucocorticoids cause such long-term “programming” remains largely untested. Here, using the Japanese quail as our study species, we independently manipulated exposure to corticosterone during pre- and/or post-natal development and investigated the subsequent effects on global gene expression profiles within the hippocampus and hypothalamus upon adulthood. Our results showed that the changes in transcriptome profiles in response to corticosterone exposure clearly differed between the hippocampus and the hypothalamus. We also showed that these effects depended on the developmental timing of exposure and identified brain-region specific gene expression patterns that were either (1) similarly altered by corticosterone regardless of the developmental stage in which hormonal exposure occurred, or (2) specifically and uniquely altered by either pre-natal or post-natal exposure to corticosterone. Corticosterone-treated birds showed alterations in networks of genes which included known markers of the programming actions of early life adversity (e.g. brain-derived neurotrophic factor, and mineralocorticoid receptor within the hippocampus; corticotropin-releasing hormone and serotonin receptors in the hypothalamus). Altogether, these findings provide for the first time experimental support to the hypothesis that exposure to elevated glucocorticoids during development may be a key hormonal signaling pathway through which the long-term phenotypic effects associated with early life adversity emerge and potentially persist throughout the lifespan. These data also highlight that stressors might have different long-lasting impacts on the brain transcriptome depending on the developmental stage in which they are experienced; more work is now required to relate these mechanisms to organismal phenotypic differences
Sample: Brain Transcriptome of three pooled individuals
SAMEA3914624 • ERS1101758 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina Genome Analyzer IIx
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: The RNA pooled samples were then processed for RNA-seq using standard TruSeq™ RNA Sample Preparation kit
Runs: 1 run, 27.4M spots, 2.1G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
ERR134622227,421,7472.1G1.7Gb2016-06-02

ID:
2595419

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