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ERX1418252: Illumina HiSeq 2000 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 100.6M spots, 15.3G bases, 9.2Gb downloads

Design: Illumina 76bp paired-end RNAseq of leaves. Santander.
Submitted by: Centro Nacional de Análisis Genómico
Study: The genome sequence of the olive Olea europaea
show Abstracthide Abstract
We have produced a reference genome sequence for the olive Olea europaea and generated resequencing data for seven additional olive trees belonging to six different subspecies of Olea europaea. The particular tree used for the reference assembly is a millenial olive tree by the name of "Santander" located in the gardens of the Santander financial city of Boadilla del Monte, Spain.
Sample: Olea europaea subsp. europea (Santander)
SAMEA2250784 • ERS371950 • All experiments • All runs
Library:
Name: 784M
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Construction protocol: The RNASeq libraries were prepared from total RNA using the TruSeq RNA Sample Prep Kit v2 (Illumina Inc.,) with minor modifications. Briefly, 0.5_g of total RNA was used as the input material for after poly-A based mRNA enrichment with oligo-dT magnetic beads. The mRNA was fragmented (resulting RNA fragment size was 80-250nt, with the major peak at 130nt). After first and second strand cDNA synthesis the double stranded cDNA was end-repaired, adenylated and the 3'-T nucleotide of the adapter was used for the Illumina barcoded adapters ligation. The ligation product was enriched by 10 cycles of PCR.
Runs: 1 run, 100.6M spots, 15.3G bases, 9.2Gb
Run# of Spots# of BasesSizePublished
ERR1346598100,607,33815.3G9.2Gb2016-04-05

ID:
2411014

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