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ERX1439933: NextSeq 500 sequencing
1 ILLUMINA (NextSeq 500) run: 21.6M spots, 1.7G bases, 844Mb downloads

Design: Sequencing using 75pb single-end reads, treatment = heat
Submitted by: department of environmental sciences
Study: RNA-seq analysis was performed to compare gene expression patterns between acclimated and non-acclimated plants.
show Abstracthide Abstract
We aimed to understand the ecological and evolutionary implications of thermal acclimation. Seeds of 40 maternal plants of Arabidopsis lyrata ssp. lyrata of one population were collected at Saugatuck Dunes State Park, Michigan, USA. Plants were then raised in growth chambers under three acclimation treatments: frost, heat, or no acclimation (40 maternal families x 3 treatments x 3 replicates = 360 plants). At the end of the treatment period, one rosette leaf was collected for 16 individuals per treatment for a RNA-seq analysis. We compared gene expression patterns between acclimated and non-acclimated plants.
Sample: arabidopsis lyrata transcriptome
SAMEA3936234 • ERS1123368 • All experiments • All runs
Library:
Name: unspecified
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: Illumina TruSeq Stranded mRNA Sample Preparation Kit (Catalog #: RS-122-2101)
Runs: 1 run, 21.6M spots, 1.7G bases, 844Mb
Run# of Spots# of BasesSizePublished
ERR136880721,574,3861.7G844Mb2016-04-26

ID:
2472604

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