SRA

ERX155869: Transcriptome Analysis of Capsicum annuum
1 LS454 (454 GS FLX Titanium) run: 279,221 spots, 179.9M bases, 486.1Mb downloads

Design: cDNA library for random sequencing of the whole mRNA from Mandarine cultivar Korea

Submitted by: NIHHS

Study: Pyrosequencing Analysis of Mandarine using GS FLX 454

PRJEB3325 • ERP001872 • All experiments • All runs

show Abstracthide Abstract

Progress in next-generation sequencing technologies have enabled discovery of massive amount of genome-wide DNA polymorphisms, single nucleotide polymorphisms (SNPs) and insertion-deletion (InDels), which are an invaluable resource to analyze genetic diversity in a population. These DNA polymorphisms will provide crucial information to identify molecular markers and genes associated with diverse traits of agronomical importance.

Sample: cDNA sequencing of the Korean hot pepper, Mandarine, using 454 GS FLX :Mandarine

SAMEA2029715 • ERS182206 • All experiments • All runs

Organism: Capsicum annuum

Library:

Name: Mandarine_GS454_KR

Instrument: 454 GS FLX Titanium

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM PCR

Layout: SINGLE

Construction protocol: This library was constructed by Roche Rapid Library Preparation Method Manual_XL+

Spot descriptor:

5 forward

Runs: 1 run, 279,221 spots, 179.9M bases, 486.1Mb

Run	# of Spots	# of Bases	Size	Published
ERR179753	279,221	179.9M	486.1Mb	2013-11-07

ID:: 531873

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