U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX3566816: Illumina HiSeq 4000 paired end sequencing
1 ILLUMINA (Illumina HiSeq 4000) run: 111.4M spots, 16.7G bases, 6Gb downloads

Submitted by: Cambridge Department of Veterinary Medicine
Study: A high-quality Transcriptome Reference for the Tasmanian devil.
show Abstracthide Abstract
This project provides a new transcriptome assembly for the Tasmanian devil (Sarcophilus harrisii). Frozen tissue RNA extractions were performed by Max Stammnitz (Department of Veterinary Medicine, University of Cambridge, UK).<br> <b>Data citation</b><br> For use of these resources, please cite: <b>The evolution of two transmissible cancers in Tasmanian devils (Stammnitz et al. 2023, Science 380:6642)</b> <b>Comment</b><br> RNA for this species transcriptome annotation was sourced from 33 Tasmanian devils between 2003 and 2017, and respectively sequenced on the equivalent of 1/3 of an Illumina HiSeq 4000 lane, yielding about 100 Million 75bp PE reads per sample. Mostly in biological duplicates, the featured tissues are: axillary nerve, bone marrow, brachial plexus nerve, brain stem, cerebellum, cerebrum, heart, liver, lung, optic nerve, ovary, pancreas, sciatic nerve, skin, spleen, testis, thyroid and trigeminal nerve.
Sample: cerebrum.1
SAMEA5986008 • ERS3788830 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Qiagen Allprep extraction, KAPA rRNA depletion, random hexamer cDNA amplification, 75bp PE sequencing
Runs: 1 run, 111.4M spots, 16.7G bases, 6Gb
Run# of Spots# of BasesSizePublished
ERR3568417111,423,22616.7G6Gb2019-10-22

ID:
9243829

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...