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ERX3567014: Illumina Genome Analyzer IIx paired end sequencing
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 444.5M spots, 60.8G bases, 39.4Gb downloads

Submitted by: Cambridge Department of Veterinary Medicine
Study: A high-quality Transcriptome Reference for the Tasmanian devil.
show Abstracthide Abstract
This project provides a new transcriptome assembly for the Tasmanian devil (Sarcophilus harrisii). Frozen tissue RNA extractions were performed by Max Stammnitz (Department of Veterinary Medicine, University of Cambridge, UK).<br> <b>Data citation</b><br> For use of these resources, please cite: <b>The evolution of two transmissible cancers in Tasmanian devils (Stammnitz et al. 2023, Science 380:6642)</b> <b>Comment</b><br> RNA for this species transcriptome annotation was sourced from 33 Tasmanian devils between 2003 and 2017, and respectively sequenced on the equivalent of 1/3 of an Illumina HiSeq 4000 lane, yielding about 100 Million 75bp PE reads per sample. Mostly in biological duplicates, the featured tissues are: axillary nerve, bone marrow, brachial plexus nerve, brain stem, cerebellum, cerebrum, heart, liver, lung, optic nerve, ovary, pancreas, sciatic nerve, skin, spleen, testis, thyroid and trigeminal nerve.
Sample: pooled.normal.1c
SAMEA5986198 • ERS3789019 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina Genome Analyzer IIx
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: 100BP PE
Runs: 1 run, 444.5M spots, 60.8G bases, 39.4Gb
Run# of Spots# of BasesSizePublished
ERR3568652444,474,40060.8G39.4Gb2019-10-22

ID:
9243853

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