assay type: CAGE-seq
sample storage: frozen, -70 freezer
sample storage processing: cryopreservation in liquid nitrogen (dead tissue)
sampling to preparation interval: 28 months
extraction protocol:
ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/USD (show full text...)(hide...)ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/USDA_SOP_RNA_Extraction_From_Tissue_20180626.pdf
library preparation location:
Edinburgh Clinical Research Facility, Western Gene (show full text...)(hide...)Edinburgh Clinical Research Facility, Western General Hospital, Crewe Rd S, Edinburgh EH4 2XU
library preparation location longitude: -3.234704 decimal degrees
library preparation location latitude: 55.962343 decimal degrees
sequencing location:
Centre for Genomic Research, Biosciences Building, (show full text...)(hide...)Centre for Genomic Research, Biosciences Building, Crown Street Liverpool, United Kingdom, L69 7ZB
sequencing location longitude: -2.963117 decimal degrees
sequencing location latitude: 53.407030 decimal degrees
sequencing date: 2019-01-16 YYYY-MM-DD
experiment target: TSS
cage protocol:
ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROS (show full text...)(hide...)ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf
sequencing primer provider: Integrated DNA Technologies
restrict enzyme target sequence: CAGCAG
rna purity - 260:280 ratio: 2.04
rna purity - 260:230 ratio: 2.16
rna integrity number: 6.8