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ERX3865673: Illumina HiSeq 2500 paired end sequencing; Raw reads: Gull_transcriptome1
1 ILLUMINA (Illumina HiSeq 2500) run: 26.4M spots, 5G bases, 2.3Gb downloads

Design: unspecified
Submitted by: UNIVERSITY OF TARTU
Study: Age-dependent expression of cancer-related genes in a long-lived seabird
show Abstracthide Abstract
Studies of model animals like mice and rats have led to great advances in our understanding of the process of tumorigenesis, but this line of study has less to offer for understanding the mechanisms of cancer resistance. Increasing the diversity of non-model species from the perspective of molecular mechanisms of natural cancer resistance can lead to new insights into the evolution of protective mechanisms against neoplastic processes, and to a wider understanding of natural cancer defense mechanisms. Such knowledge could then eventually be harnessed for the development of human cancer therapies. We suggest here that seabirds are promising, albeit currently completely ignored candidates for studying cancer defense mechanisms, as they have a longer maximum lifespan than expected from their body size and rates of energy metabolism and may have thus evolved mechanisms to limit neoplasia progression, especially at older ages. We here apply a novel, intra-specific approach of comparing old and young seabirds for improving our understanding of aging and neoplastic processes in natural settings. We used the long-lived common gulls (Larus canus) for studying the pattern of expression of cancer-related genes, based on transcriptome analysis and databases of orthologues of human cancer genes. The analysis of differently expressed cancer-related genes between young and old gulls indicated that similarly to humans, age is potentially affecting cancer risk in this species. Out of eleven differentially expressed cancer-related genes between the groups, three were likely artefactually linked to cancer. The remaining eight were downregulated in old gulls compared to young ones. The downregulation of four of them could be interpreted as a mechanism suppressing neoplasia risk, and four as increasing the risk. Based on these results, we suggest that old gulls differ from young ones both from the aspect of cancer susceptibility and tumor suppression at the genetic level.
Sample: Gull whole blood
SAMEA6503169 • ERS4267616 • All experiments • All runs
Organism: Larus canus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 26.4M spots, 5G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
ERR385359526,409,1925G2.3Gb2020-02-25

ID:
10191353

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