GSM5093809: NTLW203; Nematostella vectensis; RNA-Seq - SRA

SRX10134031: GSM5093809: NTLW203; Nematostella vectensis; RNA-Seq
4 ILLUMINA (Illumina HiSeq 2500) runs: 3.7M spots, 374.5M bases, 116Mb downloads

Submitted by: NCBI (GEO)

Study: Impact of antibiotics, cell-free supernatant, LPS, and live cells on Nematostella vectensis gene expression

PRJNA703014 • SRP307143 • All experiments • All runs

show Abstracthide Abstract

We used bacteria isolated from field samples of Nematostella vectensis to quantify gene expression through comparisons of transcriptomes. Overall design: ntotal = 76. 19 conditions (4 replicates each) (19*4 = 76).

Sample: NTLW203

SAMN17999915 • SRS8288159 • All experiments • All runs

Organism: Nematostella vectensis

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Whole-organism RNA was extracted from animals (that were preserved in RNAlater and stored at -80) using Ambion RNAqueous extraction kit. Libraries were prepared as in Meyer et al. (2011).

Experiment attributes:

GEO Accession: GSM5093809

Links:

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 3.7M spots, 374.5M bases, 116Mb

Run	# of Spots	# of Bases	Size	Published
SRR13747163	841,010	84.9M	26.6Mb	2021-02-20
SRR13747164	918,727	92.8M	28.7Mb	2021-02-20
SRR13747165	967,266	97.7M	30.1Mb	2021-02-20
SRR13747166	980,621	99M	30.6Mb	2021-02-20

ID:: 13261607

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity