GSM5093768: ABLA62; Nematostella vectensis; RNA-Seq - SRA

SRX10134062: GSM5093768: ABLA62; Nematostella vectensis; RNA-Seq
4 ILLUMINA (Illumina HiSeq 2500) runs: 3.5M spots, 350.2M bases, 106.8Mb downloads

Submitted by: NCBI (GEO)

Study: Impact of antibiotics, cell-free supernatant, LPS, and live cells on Nematostella vectensis gene expression

PRJNA703014 • SRP307143 • All experiments • All runs

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We used bacteria isolated from field samples of Nematostella vectensis to quantify gene expression through comparisons of transcriptomes. Overall design: ntotal = 76. 19 conditions (4 replicates each) (19*4 = 76).

Sample: ABLA62

SAMN18000266 • SRS8288190 • All experiments • All runs

Organism: Nematostella vectensis

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Whole-organism RNA was extracted from animals (that were preserved in RNAlater and stored at -80) using Ambion RNAqueous extraction kit. Libraries were prepared as in Meyer et al. (2011).

Experiment attributes:

GEO Accession: GSM5093768

Links:

NCBI link: NCBI Entrez (gds)

Runs: 4 runs, 3.5M spots, 350.2M bases, 106.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR13746999	786,489	79.4M	24.6Mb	2021-02-20
SRR13747000	861,669	87M	26.5Mb	2021-02-20
SRR13747001	900,629	91M	27.6Mb	2021-02-20
SRR13747002	918,922	92.8M	28.2Mb	2021-02-20

ID:: 13261638

SRA

Sequence Read Archive

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