U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1144258: RNA-Seq of Poecilia reticulata; adult male whole brain tissue: Sample TL-256-NP
1 ILLUMINA (Illumina HiSeq 2000) run: 21.2M spots, 2.1G bases, 1.3Gb downloads

Design: "Each sample comprised mRNA extracted from whole brains of two full-siblings in the same treatment group. All tissue dissections occurred 15 minutes following lights-on in the morning. A separate sequencing library was prepared for each sample, using unique index sequences from the Illumina Tru-Seq RNA kit following manufacturers instructions. Sequencing libraries were constructed and sequenced on three lanes of an Illumina HiSeq 2000 at the HudsonAlpha Genomic Services Laboratory (Huntsville, Alabama) in April 2012."
Submitted by: Florida State University
Study: Poecilia reticulata Transcriptome or Gene expression
show Abstracthide Abstract
Phenotypic plasticity is the nearly ubiquitous ability of a genotype to produce different phenotypes in response to different environments, but how such non-heritable variation contributes to adaptive evolution is controversial. Using replicated experiments in natural populations, we found that genes exhibiting non-adaptive plasticity in expression were more likely to contribute to rapid evolutionary divergence than were genes exhibiting adaptive plasticity or no plasticity. Guppies were transplanted from a stream with cichlid predators to two streams lacking cichlids, and adaptive evolution in a subset of expressed genes occurred in only 3-4 generations. We tested the ancestral plasticity of these genes by rearing the source population with and without the cichlid predator, and found the direction of plasticity in transcript abundance was opposite to the direction of parallel changes observed in the introduction populations. These results suggest that strong directional selection against genes exhibiting non-adaptive plasticity can lead to rapid evolution.
Sample:
SAMN03956782 • SRS1030236 • All experiments • All runs
Library:
Name: SL12710
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
forward

Runs: 1 run, 21.2M spots, 2.1G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR215757521,156,9352.1G1.3Gb2015-08-21

ID:
1667370

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...