RNA-Seq of Pecten maximus: trochophore control rep1 - SRA

SRX1331755: RNA-Seq of Pecten maximus: trochophore control rep1
1 ILLUMINA (Illumina HiSeq 2000) run: 31.3M spots, 7.9G bases, 3.9Gb downloads

Design: Samples consisted of approximately 20,000 pooled larvae, and were collected by filtration from experimental tanks at 24 (trochophore), 40 (early veliger) and 48 (late veliger) hours post fertilization for each of the four treatments (control = 20°C pH 8.1; acidified = 20°C pH 7.9; warmed = 22°C pH 8.1; interaction = 22°C pH 7.9). Samples were flash frozen in liquid nitrogen and stored at -80°C until RNA extraction. Samples were homogenised with steel beads and total RNA was extracted from two replicate samples per treatment per time point using TRIzol reagent (Life Technologies) according to manufacturer's instructions. RNA quality and concentration were determined using an Agilent 2100 RNA Bioanalyser (Agilent, Santa Clara, CA, USA) and NanoDrop 8000 Spectrophotometer (NanoDrop Technologies, Wilmington, DE, USA) respectively. Library preparation and sequencing with illumina HiSeq 2000 (100 bp paired-end) was carried out at the Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Germany, with 8 samples multiplexed per lane.

Submitted by: University of Brest

Study: Pecten maximus Transcriptome or Gene expression

PRJNA298284 • SRP064659 • All experiments • All runs

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Transcriptome of the great scallop Pecten maximus, comprising larval tissue exposed to two pHs and two temperatures.

Sample: Pooled samples of 20000 larvae

SAMN10261175 • SRS3959426 • All experiments • All runs

Organism: Pecten maximus

Library:

Name: D5199_Trc_ambiA

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward101 reverse

Runs: 1 run, 31.3M spots, 7.9G bases, 3.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR2601059	31,266,630	7.9G	3.9Gb	2015-10-13

ID:: 1897202

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