C_Biroi_methylome_105 - SRA

SRX1458669: C_Biroi_methylome_105
1 ILLUMINA (Illumina HiSeq 2000) run: 36.2M spots, 7.3G bases, 4.3Gb downloads

Design: Samples were collected onto dry ice immersed in ethanol (98%v/v) and kept frozen at -80°C until dissection. Dissection was performed at 4°C in PBS. RNA was extracted using Trizol followed by column purification. Total RNA was quantified using a Bioanalyzer. Libraries were prepared using the Clontech SMARTer Kit. Multiple libraries were pooled into each flow cell. Sequencing was performed using the Illumina HiSeq2000 platform, for 100 bp paired-end eads.

Submitted by: The Rockefeller University

Study: Ooceraea biroi Epigenomics

PRJNA304722 • SRP066896 • All experiments • All runs

show Abstracthide Abstract

Genome methylation has been implicated as an important mechanism in the developmental and behavioral plasticity of social insects. Because the clonal raider ant (Cerapachys biroi) does not have distinct morphological castes, and all individuals synchronously oscillate between reproduction and brood care, it is a valuable model to determine the role of epigenomics in modulating reproductive behavior in a social context.

Sample: STC1_b_Stat

SAMN04308692 • SRS1186133 • All experiments • All runs

Organism: Ooceraea biroi

Library:

Name: C_Biroi_methylome_105

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Runs: 1 run, 36.2M spots, 7.3G bases, 4.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR2969438	36,182,548	7.3G	4.3Gb	2016-01-29

ID:: 2063335

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