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SRX1733831: Sockeye kidney transcriptome
1 ILLUMINA (Illumina HiSeq 2000) run: 66.7M spots, 13.3G bases, 5.9Gb downloads

Submitted by: Fisheries and Oceans Canada
Study: Oncorhynchus nerka breed:Pitt River Assembly
show Abstracthide Abstract
The Pacific sockeye salmon Oncorhynchus nerka is a globally important food fish with high environmental significance to the western coastal regions of North America. Piscine orthoreovirus (PRV) and infectious hematopoietic necrosis virus (IHNV) are two viruses known to infect Sockeye and other salmon species and are considered important risk factors in managing cultured and wild salmon populations. The aim of this study was to provide a kidney-specific reference transcriptome for Sockeye salmon and identify genes transcripts with potential responsiveness to PRV, IHNV, or the coinfection thereof.
Sample:
SAMN04903663 • SRS1415060 • All experiments • All runs
Library:
Name: S92d14nHK
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 66.7M spots, 13.3G bases, 5.9Gb
Run# of Spots# of BasesSizePublished
SRR346725866,681,94613.3G5.9Gb2016-11-28

ID:
2482825

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