U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX220358: Transcriptome Analysis of sperm whale
1 ILLUMINA (Illumina HiSeq 2000) run: 37.2M spots, 6.4G bases, 4.1Gb downloads

Design: Illumina sequencing of Physeter macrocephalus Transcriptome or Gene expression 2880971148 paired end RNA-Seq library
Submitted by: The Genome Center at Washington University School of Medicine in St. Louis (WUGSC)
Study: Physeter macrocephalus Transcriptome or Gene expression
show Abstracthide Abstract
Physeter macrocephalus (sperm whale) is being sequenced as an aquatic model organism for the study of respiratory disease, metal toxicity and cancer. Whales are known to accumulate high levels of metals such as chromium, a human lung carcinogen and contributor to other forms of lung disease. Given that the levels of chromium in whale tissue are sufficient to seriously impair or even kill terrestrial mammals, it is hypothesized that marine mammals have evolved novel repair mechanisms that can protect their DNA from metals like chromium. Hypoxia is a well-known cause of respiratory-related diseases such as sleep apnea, chronic obstructive pulmonary disease and pulmonary emphysema. Marine mammals, however, can dive to great depths for prolonged periods of time and not experience these ill effects of hypoxia. The availability of sperm whale genome resources will allow scientists to investigate the molecular pathways contributing to these adaptations.
Sample:
SAMN01906660 • SRS387922 • All experiments • All runs
Library:
Name: 2882180904
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 37.2M spots, 6.4G bases, 4.1Gb
Run# of Spots# of BasesSizePublished
SRR65341637,166,5286.4G4.1Gb2013-01-28

ID:
307560

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...