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SRX2265026: RNAseq of Equus caballus : Ligament, native Tissue
1 ILLUMINA (Illumina HiSeq 2000) run: 24.5M spots, 2.5G bases, 1.5Gb downloads

Design: RNA-Seq, Illumina TruSeq kit (single-end, stranded, polyA)
Submitted by: ETH Zurich
Study: Identification of novel equine (Equus caballus) tendon markers using RNA sequencing
show Abstracthide Abstract
Although several tendon-selective genes exist, they are also expressed in other musculoskeletal tissues. As cell and tissue engineering is reliant on specific molecular markers to discriminate between cell types, tendon-specific genes need to be identified. In order to accomplish this, we have used RNA sequencing (RNA-seq) to compare gene expression between tendon, bone, cartilage and ligament from horses. We identified several tendon-selective gene markers, and established eyes absent homolog 2 (EYA2) and G-protein regulated inducer of neurite outgrowth 3 (GPRIN3) as specific tendon markers using RT-qPCR. Equine tendon cells cultured as three dimensional spheroids expressed significantly greater levels of EYA2 than GPRIN3, and stained positively for EYA2 using immunohistochemistry. EYA2 was also found in fibroblast-like cells within the tendon tissue matrix and in cells localized to the vascular endothelium.We have identified EYA2 and GPRIN3 as specific molecular markers of equine tendon as compared to bone, cartilage and ligament, and provide evidence for the use of EYA2 as an additional marker for tendon cells in vitro.
Sample: Ln_1
SAMN05772701 • SRS1756744 • All experiments • All runs
Organism: Equus caballus
Library:
Name: LnWe_ec
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 24.5M spots, 2.5G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR444616424,526,7432.5G1.5Gb2017-02-01

ID:
3320592

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