GSM2454637: sp_local_w2_2; Solanum pennellii; RNA-Seq - SRA

SRX2488253: GSM2454637: sp_local_w2_2; Solanum pennellii; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 20.3M spots, 4.1G bases, 2.4Gb downloads

Submitted by: NCBI (GEO)

Study: Regulatory divergence controlling wound-responsive gene expression in domesticated and wild tomatoes

PRJNA361109 • SRP096692 • All experiments • All runs

show Abstracthide Abstract

We report the global wound-induced gene expression profile to compare the underlying transcriptional mechansims among S. lycopersicum, jasmonic acid–insensitive1 (jai1) and S. pennellii. Overall design: We examined the mRNA abundances in response to mechanical wounding in the leaves of S. lycopersicum, jai1 and S. pennellii.

Sample: sp_local_w2_2

SAMN06220413 • SRS1918222 • All experiments • All runs

Organism: Solanum pennellii

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNA from the leaf tissues were extracted with RNeasy Plant Mini Kit (Qiagen, Germantown, MD, USA). The purified total RNA was used to construct a library for 100-bp paired-end sequencing following the Illumina protocol. TruSeq Stranded Total RNA Library Prep Kit was used for library preparation.

Experiment attributes:

GEO Accession: GSM2454637

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 20.3M spots, 4.1G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR5171925	20,337,740	4.1G	2.4Gb	2018-12-27

ID:: 3609305

SRA

Sequence Read Archive

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