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SRX2578826: RNA-Seq of Solanum lycopersicum compound inflorescence (s) mutant: SIM biological replicate 1
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 22.7M spots, 2.3G bases, 1.2Gb downloads

Design: RNA-sequencing from compound inflorescence (s) mutants at the sympodial inflorescence meristem stage (biological replicate 1) of meristem maturation. Meristems were acetone fixed and dissected under a stereoscope before total RNA was isolated with the ARCTURUS PicoPure RNA Isolation Kit (ThermoFisher Scientific). Libraries were prepared with the NEBnext ULTRA RNA Library Prep Kit for Illumina (New England Biolabs).
Submitted by: Cold Spring Harbor Laboratory
Study: Bypassing negative impacts of a domestication gene to improve tomato yield
show Abstracthide Abstract
Selection for inflorescence complexity is common during crop domestication. However, tomato (Solanum lycopersicum) has undergone relatively minor changes from its wild progenitor, S. pimpinellifolium. In this study, we identify two genes with independent benefits for inflorescence traits that when combined have a novel branched inflorescence phenotype with negative consequences for crop productivity. We exploited a dosage-dependent mechanism to bypass this negative epistasis for improved productivity in elite tomato germplasm. We propose that resolving similar cases of negative genetic interactions in tomato and other crops could be applied to future crop improvement efforts.
Sample: compound inflorescence (s) mutant sympodial inflorescence meristem
SAMN06350695 • SRS1993424 • All experiments • All runs
Library:
Name: 273534
Instrument: Illumina Genome Analyzer IIx
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 22.7M spots, 2.3G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR527487322,665,0232.3G1.2Gb2017-02-24

ID:
3721218

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