U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX268443: Aplysia_Early Cleavage
1 ILLUMINA (Illumina HiSeq 2000) run: 25.3M spots, 5.1G bases, 3.3Gb downloads

Submitted by: University of Florida - Leonid Moroz (UF-LM)
Study: Aplysia californica transcriptome (heart and salivary gland)
show Abstracthide Abstract
Aplysia californica is one of key models to study cellular bases of behavior and plasticity. For a comparative approach we performed transcriptome analysis of heart and salivary glands of Aplysia using pyrosequencing approach. Specifically, we developed a reduced representation sequencing method that can detect low abundant transcripts. Our method greatly reduces the amount of sequencing with more accurate quantification. Basically, sequential addition of adaptors paired with controlled digestion of cDNA generates a one transcript on read type of analysis. Combined 5’ with 3’ targeted libraries produces greater coverage of individual transcripts and high quality assembly. This data was used to compare to the Aplysia neuronal transcriptome
Sample: Generic sample from Aplysia californica
SAMN02046439 • SRS414426 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 25.3M spots, 5.1G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR83064525,306,9375.1G3.3Gb2013-11-15

ID:
376070

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...